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INDEXED
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AuxiliarySet
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IGVFDS4215TFWE
IGVFDS4215TFWE
released
Json view
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR knockout FACS screen integrating a guide (sgRNA) library targeting transcription start sites in many genes
Aliases
charles-gersbach:cd8-tcells-auxiliary-set-crispr-ko-tfome-high-bin-rep2
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Sequencing Results (Illumina)
1 item
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI5514FPKZ
fastq
reads
R1
2
Illumina MiSeq
AACJJ7LM5
1
803 MB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7226CVDS
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 90-100% expression of IL7R) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO6692QWLN
charles-gersbach:cd8-tcells-donor-24
unspecified
Homo sapiens
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7858OVUD
MeasurementSet
CRISPR knockout FACS screen integrating a guide (sgRNA) library targeting transcription start sites in many genes
charles-gersbach:cd8-tcells-measurement-set-crispr-ko-tfome-high-bin-rep2
Charles Gersbach, Duke
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5551EATG
AnalysisSet
CRISPR knockout FACS screen targeting IL7R: alignments
charles-gersbach:cd8-tcells-intermediate-analysis-crispr-ko-tfome
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke