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AuxiliarySet
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IGVFDS3881UZJT
IGVFDS3881UZJT
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:differentited_WTC11_CM_Pilot2_Mini_PB9_sgRNA_LW435
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI5457CMID
fastq
reads
R1
1
Illumina NovaSeq 6000
227C7WLT4
6
6.5 GB
Gary Hon, UT
validated
IGVFFI5492QZLT
fastq
reads
I2
1
Illumina NovaSeq 6000
227C7WLT4
6
859 MB
Gary Hon, UT
validated
IGVFFI7650HNVF
fastq
reads
I1
1
Illumina NovaSeq 6000
227C7WLT4
6
841 MB
Gary Hon, UT
validated
IGVFFI8257WJQZ
fastq
reads
R2
1
Illumina NovaSeq 6000
227C7WLT4
6
6.5 GB
Gary Hon, UT
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM4418NJET
InVitroSystem
GM25256 (WTC-11)
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW435), male, Homo sapiens modified with CRISPRi Sp-dCas9, transfected with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1756PPKO
igvf:donor_of_WTC11
male
Homo sapiens
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7818HFMO
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
gary-hon:differentited_WTC11_CM_Pilot2_Mini_PB9_LW435
Gary Hon, UT
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4252LFRU
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
gary-hon:WTC11_CM_Pilot2_Mini_PB9_PrimaryAnalysis
Gary Hon, UT
Attribution
Award
HG011996
Principal Investigator(s)
Bruce Posner
,
Gary Hon
,
William Kraus
,
Nikhil Munshi
,
Maria Chahrour
Contact P.I.
Gary Hon
Lab
Gary Hon, UT