{
"@context": "/terms/",
"@id": "/auxiliary-sets/IGVFDS3809LQRK/",
"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS3809LQRK",
"aliases": [
"jesse-engreitz:auxiliary_sortparams_CRUDO_SSFA2-Auxin6hrs-FF2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2476YZDG](/in-vitro-systems/IGVFSM2476YZDG/) has in progress subobject degron modification [95081d1b-08b4-49ed-b324-e53fc43d8456](/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2476YZDG/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2476YZDG](/in-vitro-systems/IGVFSM2476YZDG/) has in progress subobject treatment [d35868d1-c45b-49ae-8ff3-a9c0c22551c2](/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2476YZDG/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2998MXSD](/in-vitro-systems/IGVFSM2998MXSD/) has in progress subobject degron modification [95081d1b-08b4-49ed-b324-e53fc43d8456](/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2998MXSD/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2998MXSD](/in-vitro-systems/IGVFSM2998MXSD/) has in progress subobject treatment [d35868d1-c45b-49ae-8ff3-a9c0c22551c2](/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2998MXSD/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8591NYNI](/in-vitro-systems/IGVFSM8591NYNI/) has in progress subobject degron modification [95081d1b-08b4-49ed-b324-e53fc43d8456](/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8591NYNI/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8591NYNI](/in-vitro-systems/IGVFSM8591NYNI/) has in progress subobject treatment [d35868d1-c45b-49ae-8ff3-a9c0c22551c2](/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8591NYNI/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1662MZZB](/in-vitro-systems/IGVFSM1662MZZB/) has in progress subobject degron modification [95081d1b-08b4-49ed-b324-e53fc43d8456](/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1662MZZB/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1662MZZB](/in-vitro-systems/IGVFSM1662MZZB/) has in progress subobject treatment [d35868d1-c45b-49ae-8ff3-a9c0c22551c2](/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1662MZZB/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6811XGTM](/in-vitro-systems/IGVFSM6811XGTM/) has in progress subobject degron modification [95081d1b-08b4-49ed-b324-e53fc43d8456](/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6811XGTM/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6811XGTM](/in-vitro-systems/IGVFSM6811XGTM/) has in progress subobject treatment [d35868d1-c45b-49ae-8ff3-a9c0c22551c2](/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6811XGTM/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0427NNRS](/in-vitro-systems/IGVFSM0427NNRS/) has in progress subobject degron modification [95081d1b-08b4-49ed-b324-e53fc43d8456](/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0427NNRS/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0427NNRS](/in-vitro-systems/IGVFSM0427NNRS/) has in progress subobject treatment [d35868d1-c45b-49ae-8ff3-a9c0c22551c2](/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0427NNRS/"
},
{
"category": "mismatched status",
"detail": "Released human donor [IGVFDO0384OZRW](/human-donors/IGVFDO0384OZRW/) has in progress subobject publication [155f24ce-5c2c-4400-8651-da9447eaca25](/publications/155f24ce-5c2c-4400-8651-da9447eaca25/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0384OZRW/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI8693AQQE](/tabular-files/IGVFFI8693AQQE/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_tabular_file_no_file_format_specifications",
"path": "/tabular-files/IGVFFI8693AQQE/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Auxiliary set [IGVFDS3809LQRK](/auxiliary-sets/IGVFDS3809LQRK/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_file_set_for",
"path": "/auxiliary-sets/IGVFDS3809LQRK/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_for": [],
"creation_timestamp": "2024-07-02T23:42:01.919984+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO0384OZRW/",
"accession": "IGVFDO0384OZRW",
"aliases": [
"igvf:donor_of_HCT116"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "cell sorting",
"files": [
{
"@id": "/tabular-files/IGVFFI8693AQQE/",
"accession": "IGVFFI8693AQQE",
"aliases": [
"jesse-engreitz:auxiliary_sortparams_file_CRUDO_SSFA2-Auxin6hrs-FF2"
],
"content_type": "sample sort parameters",
"creation_timestamp": "2024-07-03T00:36:07.963216+00:00",
"file_format": "tsv",
"file_size": 489,
"href": "/tabular-files/IGVFFI8693AQQE/@@download/IGVFFI8693AQQE.tsv.gz",
"s3_uri": "s3://igvf-files/2024/07/03/6b9347d8-e7c6-4119-80e4-0643de2fd508/IGVFFI8693AQQE.tsv.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/sortparams2/220307B014_15.ssfa2.tsv.gz",
"upload_status": "validated"
}
],
"input_file_set_for": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS4798YRBK/",
"accession": "IGVFDS4798YRBK",
"aliases": [
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinB-PCR1-Rep1_S38",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinB-PCR2-Rep1_S44",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinB-PCR3-Rep1_S92",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinB-PCR4-Rep1_S98"
],
"preferred_assay_title": "CRISPR FlowFISH screen"
},
{
"@id": "/measurement-sets/IGVFDS2363BVTQ/",
"accession": "IGVFDS2363BVTQ",
"aliases": [
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinD-PCR1-Rep1_S40",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinD-PCR2-Rep1_S46",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinD-PCR3-Rep1_S94",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinD-PCR4-Rep1_S100"
],
"preferred_assay_title": "CRISPR FlowFISH screen"
},
{
"@id": "/measurement-sets/IGVFDS1436SBBU/",
"accession": "IGVFDS1436SBBU",
"aliases": [
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinF-PCR1-Rep1_S42",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinF-PCR2-Rep1_S48",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinF-PCR3-Rep1_S96",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinF-PCR4-Rep1_S102"
],
"preferred_assay_title": "CRISPR FlowFISH screen"
},
{
"@id": "/measurement-sets/IGVFDS4988ZVEF/",
"accession": "IGVFDS4988ZVEF",
"aliases": [
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinA-PCR1-Rep1_S37",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinA-PCR2-Rep1_S43",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinA-PCR3-Rep1_S91",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinA-PCR4-Rep1_S97"
],
"preferred_assay_title": "CRISPR FlowFISH screen"
},
{
"@id": "/measurement-sets/IGVFDS6061ICOS/",
"accession": "IGVFDS6061ICOS",
"aliases": [
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinC-PCR1-Rep1_S39",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinC-PCR2-Rep1_S45",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinC-PCR3-Rep1_S93",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinC-PCR4-Rep1_S99"
],
"preferred_assay_title": "CRISPR FlowFISH screen"
},
{
"@id": "/measurement-sets/IGVFDS9337ZLNA/",
"accession": "IGVFDS9337ZLNA",
"aliases": [
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinE-PCR1-Rep1_S41",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinE-PCR2-Rep1_S47",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinE-PCR3-Rep1_S95",
"jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF2-BinE-PCR4-Rep1_S101"
],
"preferred_assay_title": "CRISPR FlowFISH screen"
}
],
"release_timestamp": "2024-07-10T20:30:08.873254+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM2476YZDG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2476YZDG",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinA-PCR1-Rep1_S37",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinA-PCR2-Rep1_S43",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinA-PCR3-Rep1_S91",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinA-PCR4-Rep1_S97"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS5413RKIA/"
],
"modifications": [
"/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/",
"/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens",
"treatments": [
"/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/"
]
},
{
"@id": "/in-vitro-systems/IGVFSM0427NNRS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0427NNRS",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinB-PCR1-Rep1_S38",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinB-PCR2-Rep1_S44",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinB-PCR3-Rep1_S92",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinB-PCR4-Rep1_S98"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS5413RKIA/"
],
"modifications": [
"/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/",
"/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens",
"treatments": [
"/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/"
]
},
{
"@id": "/in-vitro-systems/IGVFSM2998MXSD/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2998MXSD",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinC-PCR1-Rep1_S39",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinC-PCR2-Rep1_S45",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinC-PCR3-Rep1_S93",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinC-PCR4-Rep1_S99"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS5413RKIA/"
],
"modifications": [
"/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/",
"/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens",
"treatments": [
"/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/"
]
},
{
"@id": "/in-vitro-systems/IGVFSM6811XGTM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6811XGTM",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinD-PCR1-Rep1_S40",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinD-PCR2-Rep1_S46",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinD-PCR3-Rep1_S94",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinD-PCR4-Rep1_S100"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS5413RKIA/"
],
"modifications": [
"/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/",
"/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin D for 55-65% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens",
"treatments": [
"/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/"
]
},
{
"@id": "/in-vitro-systems/IGVFSM1662MZZB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1662MZZB",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinE-PCR1-Rep1_S41",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinE-PCR2-Rep1_S47",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinE-PCR3-Rep1_S95",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinE-PCR4-Rep1_S101"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS5413RKIA/"
],
"modifications": [
"/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/",
"/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens",
"treatments": [
"/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/"
]
},
{
"@id": "/in-vitro-systems/IGVFSM8591NYNI/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8591NYNI",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinF-PCR1-Rep1_S42",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinF-PCR2-Rep1_S48",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinF-PCR3-Rep1_S96",
"jesse-engreitz:in-vitro-system_CRUDO_SSFA2-Auxin6hrs-FF2-BinF-PCR4-Rep1_S102"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS5413RKIA/"
],
"modifications": [
"/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/",
"/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens",
"treatments": [
"/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/"
]
}
],
"schema_version": "11",
"status": "released",
"submitted_by": {
"@id": "/users/100f06c6-83a7-4b4d-9dfd-053a1829773b/",
"title": "Benjamin Doughty"
},
"submitted_files_timestamp": "2024-07-03T00:36:07.963216+00:00",
"summary": "cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets",
"uuid": "476daf33-6005-47a1-add4-7829f8c143fd"
}