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IGVFDS3773NYHJ

released
File Set Type
gRNA sequencing
Summary
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR1_Rep1_S135
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR1_Rep2_S190
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR2_Rep1_S141
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR2_Rep2_S196
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR3_Rep1_S147
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR3_Rep2_S202
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR4_Rep1_S153
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR4_Rep2_S208

Sequencing Results

8 items
fastq
reads
1
Illumina HiSeq 2500
GAAGAAGT:TTGA
21 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
Illumina HiSeq 2500
AAGACACT:GCCA
21 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
Illumina HiSeq 2500
GTCATCTA:GCCA
22 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
Illumina HiSeq 2500
AAGACACT:TTGA
20 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
Illumina HiSeq 2500
GAAGAAGT:GCCA
17 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
Illumina HiSeq 2500
GTCATCTA:TTGA
25 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
Illumina HiSeq 2500
GTCGCCTT:GCCA
19 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
Illumina HiSeq 2500
GTCGCCTT:TTGA
25 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR1_Rep1_S135
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR1_Rep2_S190
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR2_Rep1_S141
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR2_Rep2_S196
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR3_Rep1_S147
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR3_Rep2_S202
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR4_Rep1_S153
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinA-PCR4_Rep2_S208
Jesse Engreitz, Stanford

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford