{
"@context": "/terms/",
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],
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"audit": {
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{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS3480ASIH](/auxiliary-sets/IGVFDS3480ASIH/) has sequence file(s): [IGVFFI0839OMDY](/sequence-files/IGVFFI0839OMDY/), [IGVFFI7919FFPL](/sequence-files/IGVFFI7919FFPL/), [IGVFFI1349RXMP](/sequence-files/IGVFFI1349RXMP/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 50,
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"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS3480ASIH/"
}
]
},
"award": {
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"title": "Jay Shendure"
},
"title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
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"creation_timestamp": "2023-12-08T23:52:33.357935+00:00",
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{
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"sex": "male",
"status": "released",
"taxa": "Mus musculus"
}
],
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{
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"upload_status": "validated"
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{
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{
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"sequencing_platform": "/platform-terms/EFO_0010963/",
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/bulkMPRA_devCRE_mEBs/bulk_MPRA_mEB_series_mBC_repB_d14_DNA_R2_001.fastq.gz",
"upload_status": "validated"
}
],
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],
"lab": {
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"title": "Jay Shendure, UW"
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"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS0885VFHW/",
"accession": "IGVFDS0885VFHW",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads"
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{
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"publication_identifiers": [
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],
"release_timestamp": "2024-06-27T00:41:13.214643+00:00",
"samples": [
{
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"@type": [
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"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3546ITTD",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day14"
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],
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],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "mouse embryonic stem cell",
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}
],
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"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
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"term_name": "embryoid body"
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"submitted_by": {
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"title": "Beth Martin"
},
"submitted_files_timestamp": "2023-12-09T00:56:39.162406+00:00",
"summary": "quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci",
"uuid": "f3277a3b-4f6d-4df3-b594-bac0bba57102"
}