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INDEXED
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AuxiliarySet
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IGVFDS3446FAJU
IGVFDS3446FAJU
released
Json view
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf9_10x2
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0168UXWB
fastq
reads
R1
1
IGVFFI4853VRDQ
Illumina NovaSeq X
223JHYLT3
3
378 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2295NKXK
fastq
reads
R2
1
IGVFFI4524JQYY
Illumina NovaSeq X
223JHYLT3
2
1.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2539LKSK
fastq
reads
R1
1
IGVFFI6753REDM
Illumina NovaSeq X
223JHYLT3
1
502 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4990FLLB
fastq
reads
R2
1
IGVFFI6753REDM
Illumina NovaSeq X
223JHYLT3
1
1.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5210WSAO
fastq
reads
I2
1
IGVFFI6753REDM
Illumina NovaSeq X
223JHYLT3
1
142 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5429FBRE
fastq
reads
I2
1
IGVFFI4853VRDQ
Illumina NovaSeq X
223JHYLT3
3
105 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5623NAWQ
fastq
reads
R1
1
IGVFFI4524JQYY
Illumina NovaSeq X
223JHYLT3
2
534 MB
Ansuman Satpathy, Stanford
validated
IGVFFI7210ATDK
fastq
reads
R2
1
IGVFFI4853VRDQ
Illumina NovaSeq X
223JHYLT3
3
817 MB
Ansuman Satpathy, Stanford
validated
IGVFFI8268RJMJ
fastq
reads
I2
1
IGVFFI4524JQYY
Illumina NovaSeq X
223JHYLT3
2
150 MB
Ansuman Satpathy, Stanford
validated
IGVFFI8666ENEF
fastq
reads
I1
1
IGVFFI4524JQYY
Illumina NovaSeq X
223JHYLT3
2
192 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM2512OHNK
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1718HCES
ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS2108XESQ
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf9_10x2
Ansuman Satpathy, Stanford
IGVFDS4370KUWU
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf9_10x2
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6435ALNY
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
ansuman-satpathy:igvf9_analysis_set_10x2
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford