Home

IGVFDS3352ZNFQ

released
File Set Type
gRNA sequencing
Summary
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci
Aliases
jesse-engreitz:auxiliary_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR1_S73
jesse-engreitz:auxiliary_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR2_S169
jesse-engreitz:auxiliary_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR3_S265
jesse-engreitz:auxiliary_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR4_S361

Sequencing Results

4 items
fastq
reads
1
AACAATGG:GTAC
6.4 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
AACAATGG:TGCG
7.3 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
AACAATGG:CATA
7.3 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
AACAATGG:ACGT
3.8 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci
  • jesse-engreitz:measurement_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR1_S73
  • jesse-engreitz:measurement_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR2_S169
  • jesse-engreitz:measurement_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR3_S265
  • jesse-engreitz:measurement_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinA-PCR4_S361
Jesse Engreitz, Stanford

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford