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INDEXED
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AuxiliarySet
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IGVFDS3325AHYB
IGVFDS3325AHYB
released
Json view
File Set Type
quantification DNA barcode sequencing
Summary
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Publications
Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel Reporter Assays
Attribution
Nadav Ahituv, UCSF
(
HG011966
—
Jay Shendure
)
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3330ABCC
fastq
reads
R2
1
UMI
IGVFFI6693ANTB
Illumina NextSeq 500
337 MB
Nadav Ahituv, UCSF
validated
IGVFFI4253JNUG
fastq
reads
R3
1
Barcode reverse
IGVFFI6693ANTB
Illumina NextSeq 500
385 MB
Nadav Ahituv, UCSF
validated
IGVFFI7434RLXA
fastq
reads
R1
1
Barcode forward
IGVFFI6693ANTB
Illumina NextSeq 500
385 MB
Nadav Ahituv, UCSF
validated
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1253DLDL
MeasurementSet
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Nadav Ahituv, UCSF
File Sets Using This Auxiliary Set as an Input
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS2165KBMD
AnalysisSet
lentiMPRA: reporter experiment, reporter experiment barcode
Nadav Ahituv, UCSF
IGVFDS5394QLIN
AnalysisSet
lentiMPRA: reporter genomic variant effects
Nadav Ahituv, UCSF