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AuxiliarySet
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IGVFDS3303TULU
IGVFDS3303TULU
released
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File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf5_10x4
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1292KZBW
fastq
reads
R2
1
IGVFFI6863WQHW
Illumina NovaSeq X
223JJCLT3
8
1.9 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2786KCGD
fastq
reads
R1
1
IGVFFI6863WQHW
Illumina NovaSeq X
223JJCLT3
8
833 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2979MEXY
fastq
reads
I1
1
IGVFFI7690EDKX
Illumina NovaSeq X
223JJCLT3
7
327 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4506DKZQ
fastq
reads
I2
1
IGVFFI9706YNGO
Illumina NovaSeq X
223JJCLT3
5
189 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4949BXFJ
fastq
reads
R2
1
IGVFFI7690EDKX
Illumina NovaSeq X
223JJCLT3
7
2.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5255AHVT
fastq
reads
R2
1
IGVFFI0349JQAS
Illumina NovaSeq X
223JJCLT3
6
2.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5449AQNB
fastq
reads
I1
1
IGVFFI0349JQAS
Illumina NovaSeq X
223JJCLT3
6
343 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5946AUVC
fastq
reads
R1
1
IGVFFI9706YNGO
Illumina NovaSeq X
223JJCLT3
5
676 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6485FIBH
fastq
reads
I1
1
IGVFFI9706YNGO
Illumina NovaSeq X
223JJCLT3
5
246 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6812OLCN
fastq
reads
R1
1
IGVFFI0349JQAS
Illumina NovaSeq X
223JJCLT3
6
937 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM3106AWHF
MultiplexedSample
GM25256 (WTC-11)
,
H1-hESC
,
H9
,
HEK293T
multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; ... and 6 more samples
Donors
4 items
Accession
Aliases
Sex
Taxa
IGVFDO1183RRBM
igvf:donor_of_HEK293T
female
Homo sapiens
IGVFDO1756PPKO
igvf:donor_of_WTC11
male
Homo sapiens
IGVFDO2718IDDQ
igvf:donor_of_H9
female
Homo sapiens
IGVFDO6638HIAD
igvf:donor_of_H1
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS1201SHMG
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf5_10x4
Ansuman Satpathy, Stanford
IGVFDS3184KNYJ
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf5_10x4
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3764KYTT
AnalysisSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:igvf5_analysis_set_10x4
Ansuman Satpathy, Stanford