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INDEXED
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AuxiliarySet
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IGVFDS3259WGKQ
IGVFDS3259WGKQ
released
Json view
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf1_10x1
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0529ZSZX
fastq
reads
R1
1
IGVFFI0503YXVJ
Illumina NovaSeq X
2257H3LT3
8
651 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1003RFPB
fastq
reads
I1
1
IGVFFI1830RWKE
Illumina NovaSeq X
2257H3LT3
7
232 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2536ELTM
fastq
reads
I2
1
IGVFFI1830RWKE
Illumina NovaSeq X
2257H3LT3
7
215 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4549DFQQ
fastq
reads
R1
1
IGVFFI1830RWKE
Illumina NovaSeq X
2257H3LT3
7
654 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5932THXZ
fastq
reads
R2
1
IGVFFI1830RWKE
Illumina NovaSeq X
2257H3LT3
7
1.5 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6262QQVY
fastq
reads
I1
1
IGVFFI0503YXVJ
Illumina NovaSeq X
2257H3LT3
8
230 MB
Ansuman Satpathy, Stanford
validated
IGVFFI7384JIDM
fastq
reads
I2
1
IGVFFI0503YXVJ
Illumina NovaSeq X
2257H3LT3
8
214 MB
Ansuman Satpathy, Stanford
validated
IGVFFI9946BRRT
fastq
reads
R2
1
IGVFFI0503YXVJ
Illumina NovaSeq X
2257H3LT3
8
1.5 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4662QKFQ
MultiplexedSample
HAP-1
,
HL-60
,
HUDEP-2
,
K562
,
U2OS
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
Donors
5 items
Accession
Aliases
Sex
Taxa
IGVFDO0965QSBA
igvf:donor_of_HUDEP-2
unspecified
Homo sapiens
IGVFDO2115EOOA
igvf:donor_of_HL-60
female
Homo sapiens
IGVFDO2722UPGC
igvf:donor_of_HAP-1
male
Homo sapiens
IGVFDO9208RPQQ
igvf:donor_of_K562
female
Homo sapiens
IGVFDO9571CSNU
igvf:donor_of_U2OS
female
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS1555ZQOW
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf1_10x1
Ansuman Satpathy, Stanford
IGVFDS3744SQTD
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf1_10x1
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8205NXKP
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
ansuman-satpathy:igvf1_analysis_set
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford