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INDEXED
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AuxiliarySet
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IGVFDS2733VDKJ
IGVFDS2733VDKJ
released
Json view
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf9_10x1
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0820WMVY
fastq
reads
R1
1
IGVFFI2903RHLD
Illumina NovaSeq X
223JHYLT3
2
585 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0995PBLZ
fastq
reads
R2
1
IGVFFI2903RHLD
Illumina NovaSeq X
223JHYLT3
2
1.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2433CITY
fastq
reads
I1
1
IGVFFI2903RHLD
Illumina NovaSeq X
223JHYLT3
2
210 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3106OQTD
fastq
reads
R2
1
IGVFFI6770PTEI
Illumina NovaSeq X
223JHYLT3
1
1.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4424OKOK
fastq
reads
I2
1
IGVFFI6770PTEI
Illumina NovaSeq X
223JHYLT3
1
164 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5281NYEA
fastq
reads
I1
1
IGVFFI6770PTEI
Illumina NovaSeq X
223JHYLT3
1
203 MB
Ansuman Satpathy, Stanford
validated
IGVFFI8474XMDU
fastq
reads
R1
1
IGVFFI6770PTEI
Illumina NovaSeq X
223JHYLT3
1
568 MB
Ansuman Satpathy, Stanford
validated
IGVFFI9730JODC
fastq
reads
I2
1
IGVFFI2903RHLD
Illumina NovaSeq X
223JHYLT3
2
168 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM9678IFHW
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1718HCES
ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS3634TPOY
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf9_10x1
Ansuman Satpathy, Stanford
IGVFDS5941UNYO
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf9_10x1
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7527QIIX
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
ansuman-satpathy:igvf9_analysis_set
ansuman-satpathy:igvf9_analysis_set_10x1
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford