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IGVFDS2549GCKW

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File Set Type
cell hashing barcode sequencing
Summary
cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_NPC_HTO_LW281
Attribution
Gary Hon, UT

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R1
1
AAC7VLGHV
2
207 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC7VLGHV
2
83 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC7VLGHV
1
232 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC7VLGHV
2
412 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC7VLGHV
1
92 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC7VLGHV
1
82 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC7VLGHV
2
76 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC7VLGHV
1
465 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW281) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in many genomic loci

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_NPC_LW281
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
  • gary-hon:WTC11_TF_Perturb_Seq_Pilot_NPC_Lenti_PrimaryAnalysis
Gary Hon, UT