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IGVFDS2440YLWS

released
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf15_10x1
Barcode Map
IGVFFI6468JUDR

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
I2
1
22NCFCLT3
2
78 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NCFCLT3
1
91 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
22NCFCLT3
1
251 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
22NCFCLT3
1
85 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
22NCFCLT3
2
224 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
22NCFCLT3
2
513 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
22NCFCLT3
1
574 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NCFCLT3
2
81 MB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Related Measurement Sets

2 items
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf15_10x1
Ansuman Satpathy, Stanford
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf15_10x1
Ansuman Satpathy, Stanford

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf15_analysis_set
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford