{
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],
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],
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{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
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"name": "audit_ntr_term_id",
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}
]
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{
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],
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},
{
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],
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},
{
"@id": "/human-donors/IGVFDO3459DFTW/",
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],
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},
{
"@id": "/human-donors/IGVFDO7503RZHO/",
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"igvf:donor_of_MCF7"
],
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},
{
"@id": "/human-donors/IGVFDO0384OZRW/",
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],
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},
{
"@id": "/human-donors/IGVFDO9018OPIO/",
"accession": "IGVFDO9018OPIO",
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"igvf:donor_of_SKNSH"
],
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"status": "released",
"taxa": "Homo sapiens"
}
],
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{
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"accession": "IGVFFI7115JMRC",
"aliases": [
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],
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"controlled_access": false,
"creation_timestamp": "2025-01-28T04:16:54.982494+00:00",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9556FZRR/",
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],
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"creation_timestamp": "2025-01-28T04:16:50.631303+00:00",
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"href": "/sequence-files/IGVFFI9556FZRR/@@download/IGVFFI9556FZRR.fastq.gz",
"s3_uri": "s3://igvf-files/2025/01/28/2d0b5932-7e66-476f-a0ed-c982547a4381/IGVFFI9556FZRR.fastq.gz",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4959ADMS/",
"accession": "IGVFFI4959ADMS",
"aliases": [
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],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-01-28T04:17:02.446623+00:00",
"file_format": "fastq",
"file_size": 204463072,
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"s3_uri": "s3://igvf-files/2025/01/28/121b0693-5f4d-4cfd-8551-b96baa13dd05/IGVFFI4959ADMS.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
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"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6525RBOW/",
"accession": "IGVFFI6525RBOW",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp18_multi_10x3_NGS1"
],
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:45:27.915787+00:00",
"file_format": "yaml",
"file_size": 1336,
"href": "/configuration-files/IGVFFI6525RBOW/@@download/IGVFFI6525RBOW.yaml.gz",
"s3_uri": "s3://igvf-files/2025/02/26/bca8f79c-a91a-43c4-945e-27ac21e2af76/IGVFFI6525RBOW.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_multi_10x3_NGS1_multi_seqspec.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4963SRAJ/"
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS0786WISU/",
"accession": "IGVFDS0786WISU",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf18_10x3"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS9563IPMU/",
"accession": "IGVFDS9563IPMU",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf18_10x3"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
}
],
"release_timestamp": "2025-03-07T01:18:04.974217+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM5815WALV/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM5815WALV",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf18_10x3"
],
"cellular_sub_pool": "3",
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "IMR-90",
"term_name": "IMR-90"
},
{
"@id": "/sample-terms/EFO_0001203/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "MCF-7",
"term_name": "MCF-7"
},
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
},
{
"@id": "/sample-terms/EFO_0003072/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:SK-N-SH"
],
"status": "released",
"summary": "SK-N-SH",
"term_name": "SK-N-SH"
},
{
"@id": "/sample-terms/EFO_0022838/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HUDEP-2"
],
"status": "released",
"summary": "HUDEP-2",
"term_name": "HUDEP-2"
},
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
"status": "released",
"summary": "TeloHAEC",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/ff03c6ff-c1f5-4b47-bd9d-62f22d5794c5/",
"purpose": "perturbation",
"status": "in progress",
"summary": "Treatment of 3 μM Yoda1 for 4 hours",
"treatment_type": "chemical"
}
]
}
],
"schema_version": "12",
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_files_timestamp": "2025-01-28T04:16:50.631303+00:00",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)",
"uuid": "30f47419-1da8-43cd-bb70-6ada49241b58"
}