Home

IGVFDS2406OSFC

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
cell hashing barcode sequencing
Summary
cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:CM_Pilot_2_PB_HTO_LW237
Attribution
Gary Hon, UT

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R2
1
AAC235NHV
1
638 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC235NHV
2
108 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC235NHV
1
117 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC235NHV
1
349 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC235NHV
1
101 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC235NHV
2
96 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC235NHV
2
577 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC235NHV
2
317 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW267) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in many genomic loci

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:CM_Pilot_2_PB_RNA_LW237
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
  • gary-hon:CM_Pilot_2_PB_RNA
Gary Hon, UT