{
"@context": "/terms/",
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"FileSet",
"Item"
],
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS2392JXXP](/auxiliary-sets/IGVFDS2392JXXP/) has sequence file(s): [IGVFFI9725DHYX](/sequence-files/IGVFFI9725DHYX/), [IGVFFI6793VJKK](/sequence-files/IGVFFI6793VJKK/), [IGVFFI6787FFMZ](/sequence-files/IGVFFI6787FFMZ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS2392JXXP/"
}
]
},
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"component": "functional characterization",
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"title": "Jay Shendure"
},
"title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
},
"control_for": [],
"creation_timestamp": "2023-12-08T23:52:41.696649+00:00",
"donors": [
{
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],
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"status": "released",
"taxa": "Mus musculus"
}
],
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{
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"creation_timestamp": "2023-12-09T00:53:00.251705+00:00",
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"upload_status": "validated"
},
{
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"creation_timestamp": "2023-12-09T00:53:01.474992+00:00",
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{
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"file_format": "fastq",
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"upload_status": "validated"
}
],
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],
"lab": {
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"title": "Jay Shendure, UW"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS0953UCYV/",
"accession": "IGVFDS0953UCYV",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day20_reads"
],
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"status": "released"
}
],
"publications": [
{
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"publication_identifiers": [
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"PMID:38724692"
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"status": "released"
}
],
"release_timestamp": "2024-06-27T00:41:17.775433+00:00",
"samples": [
{
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"@type": [
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"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3017QZLW",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day20"
],
"cell_fate_change_treatments": [
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],
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],
"construct_library_sets": [
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],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "mouse embryonic stem cell",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
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"status": "released",
"term_name": "embryoid body"
},
"taxa": "Mus musculus"
}
],
"schema_version": "12",
"status": "released",
"submitted_by": {
"@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
"title": "Beth Martin"
},
"submitted_files_timestamp": "2023-12-09T00:53:00.251705+00:00",
"summary": "quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci",
"uuid": "05d550af-8af9-49a6-9131-983a89023ce9"
}