{
"@context": "/terms/",
"@id": "/auxiliary-sets/IGVFDS2328ODXN/",
"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS2328ODXN",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM5189FTFS](/multiplexed-samples/IGVFSM5189FTFS/) has in progress subobject tabular file [IGVFFI6870GMPP](/tabular-files/IGVFFI6870GMPP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM5189FTFS/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-07-23T20:58:44.232507+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO0938OYMI/",
"accession": "IGVFDO0938OYMI",
"aliases": [
"ansuman-satpathy:singh_bcell_donor_2"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"aliases": [
"ansuman-satpathy:singh_bcell_donor_1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1264SGCS/",
"accession": "IGVFDO1264SGCS",
"aliases": [
"ansuman-satpathy:bridge_bone_marrow_donor_2038"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "lipid-conjugated oligo sequencing",
"files": [
{
"@id": "/sequence-files/IGVFFI8140EKST/",
"accession": "IGVFFI8140EKST",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS3_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:21:53.710517+00:00",
"file_format": "fastq",
"file_size": 129600184,
"href": "/sequence-files/IGVFFI8140EKST/@@download/IGVFFI8140EKST.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/e183ccc1-57a5-4bae-9005-f0fc098df696/IGVFFI8140EKST.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L003_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2811FQZI/",
"accession": "IGVFFI2811FQZI",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS4_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:22:44.243458+00:00",
"file_format": "fastq",
"file_size": 318465116,
"href": "/sequence-files/IGVFFI2811FQZI/@@download/IGVFFI2811FQZI.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/f72faa98-1cfa-4670-9fe5-bb6b7393bb56/IGVFFI2811FQZI.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L004_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8345YOCK/",
"accession": "IGVFFI8345YOCK",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS6_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:23:35.849193+00:00",
"file_format": "fastq",
"file_size": 85584529,
"href": "/sequence-files/IGVFFI8345YOCK/@@download/IGVFFI8345YOCK.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/1fd0164d-2d32-45f8-a936-ff742d616308/IGVFFI8345YOCK.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L006_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3800FRNX/",
"accession": "IGVFFI3800FRNX",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS1_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:20:58.218387+00:00",
"file_format": "fastq",
"file_size": 320807499,
"href": "/sequence-files/IGVFFI3800FRNX/@@download/IGVFFI3800FRNX.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/0e449b8d-01c9-4f21-956a-fbb19a5e3215/IGVFFI3800FRNX.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9686HHJP/",
"accession": "IGVFFI9686HHJP",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS1_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:21:09.673269+00:00",
"file_format": "fastq",
"file_size": 723283183,
"href": "/sequence-files/IGVFFI9686HHJP/@@download/IGVFFI9686HHJP.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/e49c42ca-35ff-4316-9c30-4bcbe4ac47e8/IGVFFI9686HHJP.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7411LNNW/",
"accession": "IGVFFI7411LNNW",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS4_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:22:38.505586+00:00",
"file_format": "fastq",
"file_size": 86668903,
"href": "/sequence-files/IGVFFI7411LNNW/@@download/IGVFFI7411LNNW.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/ca4935c9-a9bc-4cdb-b02a-c01983fb850b/IGVFFI7411LNNW.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L004_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5561WVHM/",
"accession": "IGVFFI5561WVHM",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS5_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:23:06.073712+00:00",
"file_format": "fastq",
"file_size": 87712362,
"href": "/sequence-files/IGVFFI5561WVHM/@@download/IGVFFI5561WVHM.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/44ce57ce-83e1-4d84-99db-fc01b679bb3f/IGVFFI5561WVHM.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L005_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1870GQNL/",
"accession": "IGVFFI1870GQNL",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS5_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:23:12.725278+00:00",
"file_format": "fastq",
"file_size": 323545527,
"href": "/sequence-files/IGVFFI1870GQNL/@@download/IGVFFI1870GQNL.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/6c63d469-c951-4cc9-9de5-dc5dc4fffa76/IGVFFI1870GQNL.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L005_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7828DBKI/",
"accession": "IGVFFI7828DBKI",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS1_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:20:52.054302+00:00",
"file_format": "fastq",
"file_size": 87009029,
"href": "/sequence-files/IGVFFI7828DBKI/@@download/IGVFFI7828DBKI.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/5038143c-5eca-455a-9667-87f11887f964/IGVFFI7828DBKI.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L001_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6156RKAR/",
"accession": "IGVFFI6156RKAR",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS2_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:21:28.935544+00:00",
"file_format": "fastq",
"file_size": 86629109,
"href": "/sequence-files/IGVFFI6156RKAR/@@download/IGVFFI6156RKAR.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/0624e695-31f2-4b04-9930-13cd3bd08ed0/IGVFFI6156RKAR.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L002_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0576JKPR/",
"accession": "IGVFFI0576JKPR",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS3_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:22:01.929302+00:00",
"file_format": "fastq",
"file_size": 88559769,
"href": "/sequence-files/IGVFFI0576JKPR/@@download/IGVFFI0576JKPR.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/94d2caa7-f7c9-4eda-b982-edb2efabca36/IGVFFI0576JKPR.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L003_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1948GYYZ/",
"accession": "IGVFFI1948GYYZ",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS5_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:23:00.226978+00:00",
"file_format": "fastq",
"file_size": 128171201,
"href": "/sequence-files/IGVFFI1948GYYZ/@@download/IGVFFI1948GYYZ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/e6934c53-608a-40be-ada0-14f145e52222/IGVFFI1948GYYZ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L005_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3132RRBP/",
"accession": "IGVFFI3132RRBP",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS6_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:23:41.777466+00:00",
"file_format": "fastq",
"file_size": 315424497,
"href": "/sequence-files/IGVFFI3132RRBP/@@download/IGVFFI3132RRBP.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/728801e3-7ca6-4a3c-97cd-f1ec06b32322/IGVFFI3132RRBP.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L006_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4777FRNQ/",
"accession": "IGVFFI4777FRNQ",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS7_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:24:02.442804+00:00",
"file_format": "fastq",
"file_size": 78402065,
"href": "/sequence-files/IGVFFI4777FRNQ/@@download/IGVFFI4777FRNQ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/85ba93c6-62a6-4e0f-ad8a-59d99f575e21/IGVFFI4777FRNQ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L007_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5770PTYC/",
"accession": "IGVFFI5770PTYC",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS3_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:22:18.355275+00:00",
"file_format": "fastq",
"file_size": 733862564,
"href": "/sequence-files/IGVFFI5770PTYC/@@download/IGVFFI5770PTYC.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/a92d66e0-2e82-4463-8dbd-d7d483745517/IGVFFI5770PTYC.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L003_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1790FDHB/",
"accession": "IGVFFI1790FDHB",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS1_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:20:43.983573+00:00",
"file_format": "fastq",
"file_size": 127355262,
"href": "/sequence-files/IGVFFI1790FDHB/@@download/IGVFFI1790FDHB.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/38ce9d96-83c6-4c55-ae3f-c9e0eb945214/IGVFFI1790FDHB.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9520QNYZ/",
"accession": "IGVFFI9520QNYZ",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS4_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:22:52.118696+00:00",
"file_format": "fastq",
"file_size": 716217087,
"href": "/sequence-files/IGVFFI9520QNYZ/@@download/IGVFFI9520QNYZ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/5cfa5e69-a8c5-4f11-a342-16fa003a704d/IGVFFI9520QNYZ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L004_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1721DNXD/",
"accession": "IGVFFI1721DNXD",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS5_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:23:20.759762+00:00",
"file_format": "fastq",
"file_size": 725499311,
"href": "/sequence-files/IGVFFI1721DNXD/@@download/IGVFFI1721DNXD.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/fa82b8c1-ea87-41a8-a524-ca79241028a6/IGVFFI1721DNXD.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L005_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0842BPLP/",
"accession": "IGVFFI0842BPLP",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS2_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:21:20.302086+00:00",
"file_format": "fastq",
"file_size": 126710699,
"href": "/sequence-files/IGVFFI0842BPLP/@@download/IGVFFI0842BPLP.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/f7e4ee12-6a74-4c22-9212-d150782662a3/IGVFFI0842BPLP.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L002_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3139WEFZ/",
"accession": "IGVFFI3139WEFZ",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS7_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:23:57.105864+00:00",
"file_format": "fastq",
"file_size": 114376183,
"href": "/sequence-files/IGVFFI3139WEFZ/@@download/IGVFFI3139WEFZ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/dc282545-4281-4efc-8a9a-eefbc6a6fc38/IGVFFI3139WEFZ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L007_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9707DOAC/",
"accession": "IGVFFI9707DOAC",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS2_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:21:36.601677+00:00",
"file_format": "fastq",
"file_size": 318143681,
"href": "/sequence-files/IGVFFI9707DOAC/@@download/IGVFFI9707DOAC.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/2e504d00-0217-46c9-92e7-bf21c7a3a53c/IGVFFI9707DOAC.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L002_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8713UMSM/",
"accession": "IGVFFI8713UMSM",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS2_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:21:45.226849+00:00",
"file_format": "fastq",
"file_size": 717249654,
"href": "/sequence-files/IGVFFI8713UMSM/@@download/IGVFFI8713UMSM.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/de7a8b16-e27d-4619-b1c4-4e1752175706/IGVFFI8713UMSM.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L002_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2358JUOA/",
"accession": "IGVFFI2358JUOA",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS3_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:22:08.736112+00:00",
"file_format": "fastq",
"file_size": 325658178,
"href": "/sequence-files/IGVFFI2358JUOA/@@download/IGVFFI2358JUOA.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/e38e0be3-5e9a-4d03-a7a6-d354f3135fd6/IGVFFI2358JUOA.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L003_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9033MPZG/",
"accession": "IGVFFI9033MPZG",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS4_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:22:32.236217+00:00",
"file_format": "fastq",
"file_size": 126370109,
"href": "/sequence-files/IGVFFI9033MPZG/@@download/IGVFFI9033MPZG.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/44ca1862-10ba-46a6-9f89-c0156f495531/IGVFFI9033MPZG.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L004_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0497CRCM/",
"accession": "IGVFFI0497CRCM",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS7_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:24:18.493639+00:00",
"file_format": "fastq",
"file_size": 647600017,
"href": "/sequence-files/IGVFFI0497CRCM/@@download/IGVFFI0497CRCM.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/8070ff16-68f9-45d3-8226-378eb59e4279/IGVFFI0497CRCM.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L007_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9085DVZZ/",
"accession": "IGVFFI9085DVZZ",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS6_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:23:29.657844+00:00",
"file_format": "fastq",
"file_size": 124891679,
"href": "/sequence-files/IGVFFI9085DVZZ/@@download/IGVFFI9085DVZZ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/74a25358-f365-480a-868a-8fa87f8de072/IGVFFI9085DVZZ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L006_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6313PJGJ/",
"accession": "IGVFFI6313PJGJ",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS6_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:23:49.233907+00:00",
"file_format": "fastq",
"file_size": 707240268,
"href": "/sequence-files/IGVFFI6313PJGJ/@@download/IGVFFI6313PJGJ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/b4339c27-cfb9-469c-a0d3-7e9179cf2551/IGVFFI6313PJGJ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L006_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3347KZPT/",
"accession": "IGVFFI3347KZPT",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x2_NGS7_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:24:10.653424+00:00",
"file_format": "fastq",
"file_size": 287575901,
"href": "/sequence-files/IGVFFI3347KZPT/@@download/IGVFFI3347KZPT.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/e6d43b76-1c60-4805-b540-21e1608eeb8a/IGVFFI3347KZPT.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI2_S9_L007_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2178BSRN/",
"accession": "IGVFFI2178BSRN",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x2_NGS1"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:27:39.311448+00:00",
"file_format": "yaml",
"file_size": 1338,
"href": "/configuration-files/IGVFFI2178BSRN/@@download/IGVFFI2178BSRN.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/6c7bb59e-0e28-4d2f-8316-ee59aa8b3473/IGVFFI2178BSRN.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x2_NGS1_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6472IGAX/",
"accession": "IGVFFI6472IGAX",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x2_NGS6"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:27:57.999827+00:00",
"file_format": "yaml",
"file_size": 1339,
"href": "/configuration-files/IGVFFI6472IGAX/@@download/IGVFFI6472IGAX.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/a05e6e35-235c-4ea1-9da5-a26f58288578/IGVFFI6472IGAX.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x2_NGS6_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0213ZUYX/",
"accession": "IGVFFI0213ZUYX",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x2_NGS3"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:27:46.686435+00:00",
"file_format": "yaml",
"file_size": 1336,
"href": "/configuration-files/IGVFFI0213ZUYX/@@download/IGVFFI0213ZUYX.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/70c1c1c1-249b-40c4-9aeb-b9b29bb31563/IGVFFI0213ZUYX.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x2_NGS3_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1210QHHX/",
"accession": "IGVFFI1210QHHX",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x2_NGS2"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:27:43.022159+00:00",
"file_format": "yaml",
"file_size": 1333,
"href": "/configuration-files/IGVFFI1210QHHX/@@download/IGVFFI1210QHHX.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/ebf0710b-7d40-422d-85e8-74ebda9340e2/IGVFFI1210QHHX.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x2_NGS2_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6785YNXM/",
"accession": "IGVFFI6785YNXM",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x2_NGS5"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:27:54.402055+00:00",
"file_format": "yaml",
"file_size": 1333,
"href": "/configuration-files/IGVFFI6785YNXM/@@download/IGVFFI6785YNXM.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/1d3aa2bf-558a-4b11-a124-f4f3ff9febff/IGVFFI6785YNXM.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x2_NGS5_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4682VBBX/",
"accession": "IGVFFI4682VBBX",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x2_NGS4"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:27:50.627710+00:00",
"file_format": "yaml",
"file_size": 1337,
"href": "/configuration-files/IGVFFI4682VBBX/@@download/IGVFFI4682VBBX.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/587bec80-0a5c-4f06-98ee-d5f913358722/IGVFFI4682VBBX.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x2_NGS4_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2384DVLD/",
"accession": "IGVFFI2384DVLD",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x2_NGS7"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:28:01.660145+00:00",
"file_format": "yaml",
"file_size": 1335,
"href": "/configuration-files/IGVFFI2384DVLD/@@download/IGVFFI2384DVLD.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/5e0c24b6-0c2a-4d2e-b0e8-5786f2db9dca/IGVFFI2384DVLD.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x2_NGS7_multi_seqspec.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4931IGGD/"
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS1219HABJ/",
"accession": "IGVFDS1219HABJ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x2"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS7359TFTN/",
"accession": "IGVFDS7359TFTN",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x2"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
}
],
"notes": "File_set_type enum oligo-conjugated lipids has been renamed to be lipid-conjugated oligo sequencing.",
"release_timestamp": "2025-03-22T00:39:00.669209+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM5189FTFS/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM5189FTFS",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf12_10x2"
],
"classifications": [
"differentiated cell specimen",
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [
{
"@id": "/institutional-certificates/1e03eda3-a983-4cee-864e-43acb4c1b186/",
"certificate_identifier": "IP115-18",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/460c2060-3b32-43c1-ab4b-b2ef0fbeb2b2/",
"certificate_identifier": "IP115-22",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "B cell",
"term_name": "B cell"
},
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "12",
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_files_timestamp": "2024-07-24T01:20:43.983573+00:00",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)",
"uuid": "353a4d8e-48f2-4c3e-aba6-11414623a091"
}