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INDEXED
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AuxiliarySet
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IGVFDS2143LCWD
IGVFDS2143LCWD
released
Json view
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf13_10x2
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0160NPXK
fastq
reads
I1
1
IGVFFI8864ZKKS
Illumina NovaSeq X
22HHHWLT3
3
61 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0531BRKY
fastq
reads
R2
1
IGVFFI3653IKKM
Illumina NovaSeq X
22HHHWLT3
2
402 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1141CCDX
fastq
reads
R1
1
IGVFFI3355WNWK
Illumina NovaSeq X
22HHHWLT3
1
162 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2896BOKB
fastq
reads
I1
1
IGVFFI3653IKKM
Illumina NovaSeq X
22HHHWLT3
2
65 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3497CDFB
fastq
reads
I2
1
IGVFFI3355WNWK
Illumina NovaSeq X
22HHHWLT3
1
60 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3710ODOK
fastq
reads
R2
1
IGVFFI8864ZKKS
Illumina NovaSeq X
22HHHWLT3
3
377 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3864GDMI
fastq
reads
I2
1
IGVFFI8864ZKKS
Illumina NovaSeq X
22HHHWLT3
3
62 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4807VSQN
fastq
reads
R1
1
IGVFFI3653IKKM
Illumina NovaSeq X
22HHHWLT3
2
179 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4834REVN
fastq
reads
I2
1
IGVFFI3653IKKM
Illumina NovaSeq X
22HHHWLT3
2
66 MB
Ansuman Satpathy, Stanford
validated
IGVFFI7629CSKK
fastq
reads
R2
1
IGVFFI3355WNWK
Illumina NovaSeq X
22HHHWLT3
1
367 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7106DAZZ
MultiplexedSample
left coronary artery
coronary artery disorder
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples
Donors
4 items
Accession
Aliases
Sex
Taxa
IGVFDO1255NCVH
thomas-quertermous:LAD_multiome_donor2
female
Homo sapiens
IGVFDO2120EMSK
thomas-quertermous:LAD_multiome_donor1
male
Homo sapiens
IGVFDO4204VAPA
thomas-quertermous:LAD_multiome_donor3
female
Homo sapiens
IGVFDO4556QZMA
thomas-quertermous:LAD_multiome_donor4
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS4493CHDR
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf13_10x2
Ansuman Satpathy, Stanford
IGVFDS8398CKNT
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf13_10x2
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0226SGHL
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
ansuman-satpathy:igvf13_analysis_set_10x2
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford