{
"@context": "/terms/",
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"AuxiliarySet",
"FileSet",
"Item"
],
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],
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{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
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},
{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS2133BONK](/auxiliary-sets/IGVFDS2133BONK/) has sequence file(s): [IGVFFI7385SAFP](/sequence-files/IGVFFI7385SAFP/), [IGVFFI3939BDDA](/sequence-files/IGVFFI3939BDDA/), [IGVFFI6758DOYZ](/sequence-files/IGVFFI6758DOYZ/), [IGVFFI0366MMUQ](/sequence-files/IGVFFI0366MMUQ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS2133BONK/"
}
]
},
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"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
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"status": "released",
"taxa": "Homo sapiens"
}
],
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],
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},
{
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],
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},
{
"@id": "/sequence-files/IGVFFI6758DOYZ/",
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"jesse-engreitz:sequence_files-TeloHAEC_Perturb-seq_2kG-Dialout_2kg_2PMDox1_2.2_ACCAACTG_L001_R2_001.fastq.gz"
],
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"creation_timestamp": "2024-02-06T21:20:52.139124+00:00",
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"href": "/sequence-files/IGVFFI6758DOYZ/@@download/IGVFFI6758DOYZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/02/06/6698b396-004c-42d2-a448-b34f9f35bbbb/IGVFFI6758DOYZ.fastq.gz",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0366MMUQ/",
"accession": "IGVFFI0366MMUQ",
"aliases": [
"jesse-engreitz:sequence_files-TeloHAEC_Perturb-seq_2kG-Dialout_2kg_2PMDox1_2_ACCAACTG_L001_R2_001.fastq.gz"
],
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"creation_timestamp": "2024-02-06T21:20:36.767993+00:00",
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"file_size": 448596328,
"href": "/sequence-files/IGVFFI0366MMUQ/@@download/IGVFFI0366MMUQ.fastq.gz",
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"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS7943IIWZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS7020OWZV/",
"accession": "IGVFDS7020OWZV",
"aliases": [
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],
"preferred_assay_title": "Perturb-seq",
"status": "preview"
}
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM4878HUHM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
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"aliases": [
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],
"classifications": [
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],
"construct_library_sets": [
"/construct-library-sets/IGVFDS1298TUYG/"
],
"modifications": [
{
"@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
"modality": "interference",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
"status": "released",
"summary": "TeloHAEC",
"term_name": "TeloHAEC"
}
],
"status": "preview",
"summary": "TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "12",
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"submitted_by": {
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"title": "Ronghao Zhou"
},
"submitted_files_timestamp": "2024-02-06T21:20:30.387617+00:00",
"summary": "gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci",
"uuid": "22d4afe5-a218-4493-8274-25f46dde4496"
}