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AuxiliarySet
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IGVFDS1931QVXR
IGVFDS1931QVXR
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_iPSC_sgRNA_LW289
Attribution
Gary Hon, UT
(
HG011996
—
Gary Hon
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1333KJVP
fastq
reads
R2
1
Illumina NextSeq 2000
AAF3JCVM5
1
989 MB
Gary Hon, UT
validated
IGVFFI2505GTMO
fastq
reads
R1
1
Illumina NextSeq 2000
AAF3JCVM5
1
936 MB
Gary Hon, UT
validated
IGVFFI4370ZHGH
fastq
reads
I2
1
Illumina NextSeq 2000
AAF3JCVM5
1
255 MB
Gary Hon, UT
validated
IGVFFI6068UCJF
fastq
reads
I1
1
Illumina NextSeq 2000
AAF3JCVM5
1
301 MB
Gary Hon, UT
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM1597KVRS
InVitroSystem
GM25256 (WTC-11)
IGVFDS2302LCEO
Homo sapiens (male) GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW289) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1756PPKO
igvf:donor_of_WTC11
male
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS2302LCEO
guide (sgRNA) library targeting accessible genome regions in many genomic loci
IGVFFI7568FEHI
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3495FUIW
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
gary-hon:TF_Perturb_Seq_Pilot_Lenti_iPSC_LW289
Gary Hon, UT
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7340YDHF
AnalysisSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
gary-hon:WTC11_TF_Perturb_Seq_Pilot_iPSC_Lenti_PrimaryAnalysis
Gary Hon, UT