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INDEXED
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AuxiliarySet
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IGVFDS1833OZIZ
IGVFDS1833OZIZ
released
GRU
PUB
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File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf13_10x1
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1199PPTE
fastq
reads
I2
1
IGVFFI2275SMIL
Illumina NovaSeq X
22HHHWLT3
3
60 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1871WQFF
fastq
reads
I1
1
IGVFFI2275SMIL
Illumina NovaSeq X
22HHHWLT3
3
60 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2161ACFO
fastq
reads
I1
1
IGVFFI1162NRSV
Illumina NovaSeq X
22HHHWLT3
1
58 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3138ZJNP
fastq
reads
R2
1
IGVFFI6515OBZI
Illumina NovaSeq X
22HHHWLT3
2
379 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3966UAPV
fastq
reads
R2
1
IGVFFI1162NRSV
Illumina NovaSeq X
22HHHWLT3
1
334 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4481MZWB
fastq
reads
I1
1
IGVFFI6515OBZI
Illumina NovaSeq X
22HHHWLT3
2
65 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4934WVFV
fastq
reads
R1
1
IGVFFI6515OBZI
Illumina NovaSeq X
22HHHWLT3
2
169 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5406KRLP
fastq
reads
I2
1
IGVFFI6515OBZI
Illumina NovaSeq X
22HHHWLT3
2
64 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6566IFXE
fastq
reads
R2
1
IGVFFI2275SMIL
Illumina NovaSeq X
22HHHWLT3
3
351 MB
Ansuman Satpathy, Stanford
validated
IGVFFI7554KMLG
fastq
reads
R1
1
IGVFFI1162NRSV
Illumina NovaSeq X
22HHHWLT3
1
149 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6422YWWA
MultiplexedSample
left coronary artery
coronary artery disorder
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples
Donors
4 items
Accession
Aliases
Sex
Taxa
IGVFDO1255NCVH
thomas-quertermous:LAD_multiome_donor2
female
Homo sapiens
IGVFDO2120EMSK
thomas-quertermous:LAD_multiome_donor1
male
Homo sapiens
IGVFDO4204VAPA
thomas-quertermous:LAD_multiome_donor3
female
Homo sapiens
IGVFDO4556QZMA
thomas-quertermous:LAD_multiome_donor4
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS1681DUIN
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf13_10x1
Ansuman Satpathy, Stanford
IGVFDS3842BVTL
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf13_10x1
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5901DVUG
AnalysisSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:igvf13_analysis_set
ansuman-satpathy:igvf13_analysis_set_10x1
Ansuman Satpathy, Stanford