IGVFDS1549RKIJ

released
{
    "@context": "/terms/",
    "@id": "/auxiliary-sets/IGVFDS1549RKIJ/",
    "@type": [
        "AuxiliarySet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS1549RKIJ",
    "aliases": [
        "jesse-engreitz:auxiliary_sortparams_CRUDO_CCND1_Auxin0hrs-FF2"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM6482UHDK](/in-vitro-systems/IGVFSM6482UHDK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM6482UHDK/"
            },
            {
                "category": "missing publication",
                "detail": "Auxiliary set [IGVFDS1549RKIJ](/auxiliary-sets/IGVFDS1549RKIJ/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_file_set_missing_publication",
                "path": "/auxiliary-sets/IGVFDS1549RKIJ/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM6932DXSV](/in-vitro-systems/IGVFSM6932DXSV/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM6932DXSV/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM2887QEDU](/in-vitro-systems/IGVFSM2887QEDU/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM2887QEDU/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM9888RFRZ](/in-vitro-systems/IGVFSM9888RFRZ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM9888RFRZ/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM9327YPCM](/in-vitro-systems/IGVFSM9327YPCM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM9327YPCM/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM0671URTU](/in-vitro-systems/IGVFSM0671URTU/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM0671URTU/"
            }
        ],
        "NOT_COMPLIANT": [
            {
                "category": "missing file format specifications",
                "detail": "Tabular file [IGVFFI7335KPIM](/tabular-files/IGVFFI7335KPIM/) has no `file_format_specifications`. Tabular files, with the exception of vcf files, are expected to link to a file format specifications document describing the headers of the file.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_file_no_file_format_specifications",
                "path": "/tabular-files/IGVFFI7335KPIM/"
            }
        ],
        "WARNING": [
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM6482UHDK](/in-vitro-systems/IGVFSM6482UHDK/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM6482UHDK/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM6932DXSV](/in-vitro-systems/IGVFSM6932DXSV/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM6932DXSV/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM2887QEDU](/in-vitro-systems/IGVFSM2887QEDU/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM2887QEDU/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM9888RFRZ](/in-vitro-systems/IGVFSM9888RFRZ/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM9888RFRZ/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM9327YPCM](/in-vitro-systems/IGVFSM9327YPCM/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM9327YPCM/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM0671URTU](/in-vitro-systems/IGVFSM0671URTU/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM0671URTU/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
            "title": "Jesse Engreitz"
        },
        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
    },
    "construct_library_sets": [
        {
            "@id": "/construct-library-sets/IGVFDS6351FGNG/",
            "accession": "IGVFDS6351FGNG",
            "file_set_type": "guide library",
            "integrated_content_files": [
                {
                    "@id": "/tabular-files/IGVFFI5924HOIN/",
                    "accession": "IGVFFI5924HOIN",
                    "content_type": "guide RNA sequences",
                    "status": "released",
                    "summary": "guide RNA sequences"
                }
            ],
            "status": "released",
            "summary": "guide (sgRNA) library targeting accessible genome regions in many genomic loci"
        }
    ],
    "control_for": [],
    "creation_timestamp": "2024-07-02T23:41:52.046338+00:00",
    "donors": [
        {
            "@id": "/human-donors/IGVFDO0384OZRW/",
            "accession": "IGVFDO0384OZRW",
            "aliases": [
                "igvf:donor_of_HCT116"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "file_set_type": "cell sorting",
    "files": [
        {
            "@id": "/tabular-files/IGVFFI7335KPIM/",
            "accession": "IGVFFI7335KPIM",
            "aliases": [
                "jesse-engreitz:auxiliary_sortparams_file_CRUDO_CCND1_Auxin0hrs-FF2"
            ],
            "content_type": "sample sort parameters",
            "controlled_access": false,
            "creation_timestamp": "2024-07-03T00:35:18.571782+00:00",
            "file_format": "tsv",
            "file_size": 491,
            "href": "/tabular-files/IGVFFI7335KPIM/@@download/IGVFFI7335KPIM.tsv.gz",
            "s3_uri": "s3://igvf-files/2024/07/03/e43c4751-3e6d-48e2-bb6f-bc7abf870b1a/IGVFFI7335KPIM.tsv.gz",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/sortparams2/220307B014_3.tsv.gz",
            "upload_status": "validated"
        }
    ],
    "input_for": [
        "/analysis-sets/IGVFDS1569RNPD/"
    ],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "measurement_sets": [
        {
            "@id": "/measurement-sets/IGVFDS3585LXSG/",
            "accession": "IGVFDS3585LXSG",
            "aliases": [
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinC-PCR1-Rep1_S231",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinC-PCR2-Rep1_S237",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinC-PCR3-Rep1_S273",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinC-PCR4-Rep1_S279"
            ],
            "preferred_assay_title": "CRISPR FlowFISH screen",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3149HCGU/",
            "accession": "IGVFDS3149HCGU",
            "aliases": [
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinB-PCR1-Rep1_S230",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinB-PCR2-Rep1_S236",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinB-PCR3-Rep1_S272",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinB-PCR4-Rep1_S278"
            ],
            "preferred_assay_title": "CRISPR FlowFISH screen",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS5565SKCZ/",
            "accession": "IGVFDS5565SKCZ",
            "aliases": [
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinE-PCR1-Rep1_S233",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinE-PCR2-Rep1_S239",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinE-PCR3-Rep1_S275",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinE-PCR4-Rep1_S281"
            ],
            "preferred_assay_title": "CRISPR FlowFISH screen",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS2949NCKP/",
            "accession": "IGVFDS2949NCKP",
            "aliases": [
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinD-PCR1-Rep1_S232",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinD-PCR2-Rep1_S238",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinD-PCR3-Rep1_S274",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinD-PCR4-Rep1_S280"
            ],
            "preferred_assay_title": "CRISPR FlowFISH screen",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3504GXZA/",
            "accession": "IGVFDS3504GXZA",
            "aliases": [
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinF-PCR1-Rep1_S234",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinF-PCR2-Rep1_S240",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinF-PCR3-Rep1_S276",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinF-PCR4-Rep1_S282"
            ],
            "preferred_assay_title": "CRISPR FlowFISH screen",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS5549RUFF/",
            "accession": "IGVFDS5549RUFF",
            "aliases": [
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinA-PCR1-Rep1_S229",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinA-PCR2-Rep1_S235",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinA-PCR3-Rep1_S271",
                "jesse-engreitz:measurement_CRUDO_CCND1_Auxin0hrs-FF2-BinA-PCR4-Rep1_S277"
            ],
            "preferred_assay_title": "CRISPR FlowFISH screen",
            "status": "released"
        }
    ],
    "release_timestamp": "2024-07-10T20:27:09.763990+00:00",
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM9327YPCM/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9327YPCM",
            "aliases": [
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinA-PCR1-Rep1_S229",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinA-PCR2-Rep1_S235",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinA-PCR3-Rep1_S271",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinA-PCR4-Rep1_S277"
            ],
            "classifications": [
                "cell line"
            ],
            "institutional_certificates": [],
            "modifications": [
                {
                    "@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
                    "modality": "interference",
                    "status": "released"
                },
                {
                    "@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
                    "modality": "degradation",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0002824/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:HCT116"
                    ],
                    "status": "released",
                    "summary": "HCT116",
                    "term_name": "HCT116"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) HCT116 cell line (sorting details: FACS bin A for 0-10% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM6482UHDK/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM6482UHDK",
            "aliases": [
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinB-PCR1-Rep1_S230",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinB-PCR2-Rep1_S236",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinB-PCR3-Rep1_S272",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinB-PCR4-Rep1_S278"
            ],
            "classifications": [
                "cell line"
            ],
            "institutional_certificates": [],
            "modifications": [
                {
                    "@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
                    "modality": "interference",
                    "status": "released"
                },
                {
                    "@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
                    "modality": "degradation",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0002824/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:HCT116"
                    ],
                    "status": "released",
                    "summary": "HCT116",
                    "term_name": "HCT116"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) HCT116 cell line (sorting details: FACS bin B for 10-20% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM2887QEDU/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM2887QEDU",
            "aliases": [
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinC-PCR1-Rep1_S231",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinC-PCR2-Rep1_S237",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinC-PCR3-Rep1_S273",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinC-PCR4-Rep1_S279"
            ],
            "classifications": [
                "cell line"
            ],
            "institutional_certificates": [],
            "modifications": [
                {
                    "@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
                    "modality": "interference",
                    "status": "released"
                },
                {
                    "@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
                    "modality": "degradation",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0002824/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:HCT116"
                    ],
                    "status": "released",
                    "summary": "HCT116",
                    "term_name": "HCT116"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) HCT116 cell line (sorting details: FACS bin C for 35-45% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM9888RFRZ/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9888RFRZ",
            "aliases": [
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinD-PCR1-Rep1_S232",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinD-PCR2-Rep1_S238",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinD-PCR3-Rep1_S274",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinD-PCR4-Rep1_S280"
            ],
            "classifications": [
                "cell line"
            ],
            "institutional_certificates": [],
            "modifications": [
                {
                    "@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
                    "modality": "interference",
                    "status": "released"
                },
                {
                    "@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
                    "modality": "degradation",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0002824/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:HCT116"
                    ],
                    "status": "released",
                    "summary": "HCT116",
                    "term_name": "HCT116"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) HCT116 cell line (sorting details: FACS bin D for 55-65% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM0671URTU/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM0671URTU",
            "aliases": [
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinE-PCR1-Rep1_S233",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinE-PCR2-Rep1_S239",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinE-PCR3-Rep1_S275",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinE-PCR4-Rep1_S281"
            ],
            "classifications": [
                "cell line"
            ],
            "institutional_certificates": [],
            "modifications": [
                {
                    "@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
                    "modality": "interference",
                    "status": "released"
                },
                {
                    "@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
                    "modality": "degradation",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0002824/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:HCT116"
                    ],
                    "status": "released",
                    "summary": "HCT116",
                    "term_name": "HCT116"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) HCT116 cell line (sorting details: FACS bin E for 80-90% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM6932DXSV/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM6932DXSV",
            "aliases": [
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinF-PCR1-Rep1_S234",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinF-PCR2-Rep1_S240",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinF-PCR3-Rep1_S276",
                "jesse-engreitz:in-vitro-system_CRUDO_CCND1_Auxin0hrs-FF2-BinF-PCR4-Rep1_S282"
            ],
            "classifications": [
                "cell line"
            ],
            "institutional_certificates": [],
            "modifications": [
                {
                    "@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
                    "modality": "interference",
                    "status": "released"
                },
                {
                    "@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
                    "modality": "degradation",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0002824/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:HCT116"
                    ],
                    "status": "released",
                    "summary": "HCT116",
                    "term_name": "HCT116"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) HCT116 cell line (sorting details: FACS bin F for 80-100% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
            "taxa": "Homo sapiens"
        }
    ],
    "schema_version": "12",
    "status": "released",
    "submitted_by": {
        "@id": "/users/100f06c6-83a7-4b4d-9dfd-053a1829773b/",
        "title": "Benjamin Doughty"
    },
    "submitted_files_timestamp": "2024-07-03T00:35:18.571782+00:00",
    "summary": "cell sorting for mixed CRISPR FlowFISH screen sorted on the expression of CCND1 integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen sorted on the expression of CCND1 integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets",
    "uuid": "df662ff5-6531-4150-a02d-3933def6e0b8"
}