{
"@context": "/terms/",
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"AuxiliarySet",
"FileSet",
"Item"
],
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],
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"INTERNAL_ACTION": [
{
"category": "unexpected seqspecs",
"detail": "Sequence File [IGVFFI9197GQMP](/sequence-files/IGVFFI9197GQMP/) has multiple in progress sequence specification files. A sequence file is expected to have only one in progress sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_multiple_seqspec_per_seqfile",
"path": "/sequence-files/IGVFFI9197GQMP/"
},
{
"category": "unexpected seqspecs",
"detail": "Sequence File [IGVFFI7577NRWF](/sequence-files/IGVFFI7577NRWF/) has multiple in progress sequence specification files. A sequence file is expected to have only one in progress sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_multiple_seqspec_per_seqfile",
"path": "/sequence-files/IGVFFI7577NRWF/"
},
{
"category": "unexpected seqspecs",
"detail": "Sequence File [IGVFFI5640PFLS](/sequence-files/IGVFFI5640PFLS/) has multiple in progress sequence specification files. A sequence file is expected to have only one in progress sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_multiple_seqspec_per_seqfile",
"path": "/sequence-files/IGVFFI5640PFLS/"
},
{
"category": "unexpected seqspecs",
"detail": "Sequence File [IGVFFI3190GFNQ](/sequence-files/IGVFFI3190GFNQ/) has multiple in progress sequence specification files. A sequence file is expected to have only one in progress sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_multiple_seqspec_per_seqfile",
"path": "/sequence-files/IGVFFI3190GFNQ/"
},
{
"category": "unexpected seqspecs",
"detail": "Sequence File [IGVFFI5061UUQA](/sequence-files/IGVFFI5061UUQA/) has multiple in progress sequence specification files. A sequence file is expected to have only one in progress sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_multiple_seqspec_per_seqfile",
"path": "/sequence-files/IGVFFI5061UUQA/"
},
{
"category": "unexpected seqspecs",
"detail": "Sequence File [IGVFFI7721URJL](/sequence-files/IGVFFI7721URJL/) has multiple in progress sequence specification files. A sequence file is expected to have only one in progress sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_multiple_seqspec_per_seqfile",
"path": "/sequence-files/IGVFFI7721URJL/"
}
]
},
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"component": "functional characterization",
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"title": "Jay Shendure"
},
"title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
},
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"accession": "IGVFDS7655GRFI",
"file_set_type": "reporter library",
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{
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"accession": "IGVFFI8904VCYX",
"content_type": "MPRA sequence designs",
"status": "released",
"summary": "MPRA sequence designs"
}
],
"status": "released",
"summary": "reporter library targeting accessible genome regions in many genomic loci"
}
],
"control_for": [],
"creation_timestamp": "2023-12-08T23:52:15.422215+00:00",
"donors": [
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"aliases": [
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"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
}
],
"file_set_type": "circularized RNA barcode detection",
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"accession": "IGVFFI5640PFLS",
"aliases": [
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],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-09T00:59:07.784513+00:00",
"file_format": "fastq",
"file_size": 187807387,
"href": "/sequence-files/IGVFFI5640PFLS/@@download/IGVFFI5640PFLS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/09/b0273a80-80ef-4305-aaf1-42eba636d082/IGVFFI5640PFLS.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0009173/",
"status": "released",
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"upload_status": "validated"
},
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"accession": "IGVFFI9197GQMP",
"aliases": [
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],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-09T00:59:11.303527+00:00",
"file_format": "fastq",
"file_size": 306249279,
"href": "/sequence-files/IGVFFI9197GQMP/@@download/IGVFFI9197GQMP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/09/16078e80-107f-4a02-9143-f57569a7618c/IGVFFI9197GQMP.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0010963/",
"status": "released",
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/sc_rep_devCRE_mEBs/sc_rep_mEB_series_oBC_CS1_repB_lane1_reseq_I1_001.fastq.gz",
"upload_status": "validated"
},
{
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"accession": "IGVFFI7721URJL",
"aliases": [
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"creation_timestamp": "2023-12-09T00:59:09.040415+00:00",
"file_format": "fastq",
"file_size": 463805765,
"href": "/sequence-files/IGVFFI7721URJL/@@download/IGVFFI7721URJL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/09/90116fc0-435f-4e4b-937a-dd6d184e700c/IGVFFI7721URJL.fastq.gz",
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"status": "released",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3190GFNQ/",
"accession": "IGVFFI3190GFNQ",
"aliases": [
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],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-09T00:59:13.592732+00:00",
"file_format": "fastq",
"file_size": 723775319,
"href": "/sequence-files/IGVFFI3190GFNQ/@@download/IGVFFI3190GFNQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/09/d61fcc94-3c79-41c0-b7ef-74bbcc2eaf92/IGVFFI3190GFNQ.fastq.gz",
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"status": "released",
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"upload_status": "validated"
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{
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"aliases": [
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],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-09T00:59:10.273137+00:00",
"file_format": "fastq",
"file_size": 651111535,
"href": "/sequence-files/IGVFFI7577NRWF/@@download/IGVFFI7577NRWF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/09/60823bcd-c7b1-42da-b904-28abaa99797a/IGVFFI7577NRWF.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0009173/",
"status": "released",
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/sc_rep_devCRE_mEBs/sc_rep_mEB_series_oBC_CS1_repB_lane1_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5061UUQA/",
"accession": "IGVFFI5061UUQA",
"aliases": [
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],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-09T00:59:12.491592+00:00",
"file_format": "fastq",
"file_size": 932932385,
"href": "/sequence-files/IGVFFI5061UUQA/@@download/IGVFFI5061UUQA.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/09/87fcc5bd-1337-4f29-af1d-836ded395cca/IGVFFI5061UUQA.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0010963/",
"status": "released",
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/sc_rep_devCRE_mEBs/sc_rep_mEB_series_oBC_CS1_repB_lane1_reseq_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9532SVZB/",
"accession": "IGVFFI9532SVZB",
"aliases": [
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],
"content_type": "seqspec",
"creation_timestamp": "2024-08-22T22:51:34.627421+00:00",
"file_format": "yaml",
"file_size": 887,
"href": "/configuration-files/IGVFFI9532SVZB/@@download/IGVFFI9532SVZB.yaml.gz",
"s3_uri": "s3://igvf-files/2024/08/22/53adb440-1c5e-4c73-89e0-2e887c3e7243/IGVFFI9532SVZB.yaml.gz",
"status": "in progress",
"submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/scQers/scQers_IGVFDS1156NHWQ_reseq_seqspec.yaml.gz",
"upload_status": "validated"
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{
"@id": "/configuration-files/IGVFFI4325OITW/",
"accession": "IGVFFI4325OITW",
"aliases": [
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],
"content_type": "seqspec",
"creation_timestamp": "2024-08-22T22:51:32.150285+00:00",
"file_format": "yaml",
"file_size": 884,
"href": "/configuration-files/IGVFFI4325OITW/@@download/IGVFFI4325OITW.yaml.gz",
"s3_uri": "s3://igvf-files/2024/08/22/e336865e-acad-469f-b7ef-194160b3320a/IGVFFI4325OITW.yaml.gz",
"status": "in progress",
"submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/scQers/scQers_IGVFDS1156NHWQ_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9611ZCEA/",
"accession": "IGVFFI9611ZCEA",
"aliases": [
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],
"content_type": "seqspec",
"creation_timestamp": "2025-03-24T19:35:38.011009+00:00",
"file_format": "yaml",
"file_size": 1305,
"href": "/configuration-files/IGVFFI9611ZCEA/@@download/IGVFFI9611ZCEA.yaml.gz",
"s3_uri": "s3://igvf-files/2025/03/24/a21878b8-f0bc-4c98-85c6-5fe4577210b4/IGVFFI9611ZCEA.yaml.gz",
"status": "in progress",
"submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/scQers/scQers_IGVFDS1156NHWQ_oBC_reseq_seqspec_v3.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0780DMSC/",
"accession": "IGVFFI0780DMSC",
"aliases": [
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],
"content_type": "seqspec",
"creation_timestamp": "2025-03-24T19:35:36.559875+00:00",
"file_format": "yaml",
"file_size": 1310,
"href": "/configuration-files/IGVFFI0780DMSC/@@download/IGVFFI0780DMSC.yaml.gz",
"s3_uri": "s3://igvf-files/2025/03/24/edc84b22-c793-4917-bc18-bd4c8e613fbd/IGVFFI0780DMSC.yaml.gz",
"status": "in progress",
"submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/scQers/scQers_IGVFDS1156NHWQ_oBC_seqspec_v3.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
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],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"measurement_sets": [
{
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"accession": "IGVFDS0228POXF",
"aliases": [
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"status": "released"
}
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"publications": [
{
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"status": "released"
}
],
"release_timestamp": "2024-06-27T00:41:46.317583+00:00",
"samples": [
{
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"@type": [
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"Biosample",
"Sample",
"Item"
],
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"aliases": [
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],
"cellular_sub_pool": "10Xlane1",
"classifications": [
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],
"institutional_certificates": [],
"sample_terms": [
{
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"@type": [
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"OntologyTerm",
"Item"
],
"status": "released",
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"term_name": "mouse embryonic stem cell"
}
],
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"status": "released",
"term_name": "embryoid body"
},
"taxa": "Mus musculus"
}
],
"schema_version": "12",
"status": "released",
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"title": "Beth Martin"
},
"submitted_files_timestamp": "2023-12-09T00:59:07.784513+00:00",
"summary": "circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci",
"uuid": "878d1268-2155-4997-89cc-13354d03b31e"
}