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IGVFDS1073DKXV

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
quantification DNA barcode sequencing
Summary
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
Aliases
jesse-engreitz:THP1-PPIF_promoter_lentiMPRA_BioRep2_DNA_BarcodeSequencing
Attribution
Jesse Engreitz, Stanford

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
R1
1
32 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
34 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
32 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_THP1
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting sequence variants in a genomic locus

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
  • jesse-engreitz:THP1-PPIF_promoter_lentiMPRA_BioRep2_RNA_BarcodeSequencing
Jesse Engreitz, Stanford

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
lentiMPRA: reporter experiment
  • jesse-engreitz:PPIF_promoter_lentiMPRA_MPRAsnakeflow_analysis
Jesse Engreitz, Stanford