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INDEXED
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AuxiliarySet
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IGVFDS0993OMZM
IGVFDS0993OMZM
released
Json view
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Aliases
charles-gersbach:cd8-tcells-perturb-seq-crispra-grna-rep2
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1815OERU
fastq
reads
R2
2
IGVFFI0118MWHA
Illumina NovaSeq 6000
HMCCWDSX3
3
2.3 GB
Charles Gersbach, Duke
validated
IGVFFI2156GTTL
fastq
reads
R1
2
IGVFFI8004NCEQ
Illumina NovaSeq 6000
HMCCWDSX3
1
1.3 GB
Charles Gersbach, Duke
validated
IGVFFI2310TPCX
fastq
reads
R1
2
IGVFFI6418YXCM
Illumina NovaSeq 6000
HMCCWDSX3
4
1.2 GB
Charles Gersbach, Duke
validated
IGVFFI2667TSYX
fastq
reads
R1
2
IGVFFI8366TCMN
Illumina NovaSeq 6000
HMCCWDSX3
2
1.2 GB
Charles Gersbach, Duke
validated
IGVFFI3477FTDC
fastq
reads
R1
2
IGVFFI0118MWHA
Illumina NovaSeq 6000
HMCCWDSX3
3
1.2 GB
Charles Gersbach, Duke
validated
IGVFFI5776QDOU
fastq
reads
R2
2
IGVFFI8004NCEQ
Illumina NovaSeq 6000
HMCCWDSX3
1
2.3 GB
Charles Gersbach, Duke
validated
IGVFFI8495QQKY
fastq
reads
R2
2
IGVFFI6418YXCM
Illumina NovaSeq 6000
HMCCWDSX3
4
2.3 GB
Charles Gersbach, Duke
validated
IGVFFI8859ADJH
fastq
reads
R2
2
IGVFFI8366TCMN
Illumina NovaSeq 6000
HMCCWDSX3
2
2.3 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6223YCQV
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS0821YMMV
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO6082RNLT
charles-gersbach:cd8-tcells-donor-7
unspecified
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS0821YMMV
guide (sgRNA) library targeting transcription start sites in 24 genes
IGVFFI1405WMSH
IGVFFI2489BLJI
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1675WFHV
MeasurementSet
CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
charles-gersbach:cd8-tcells-perturb-seq-crispra-gex-rep2
Charles Gersbach, Duke
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5239SBBT
AnalysisSet
activation Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
charles-gersbach:cd8-tcells-analysis-set-perturb-seq-crispra
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke