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IGVFDS0470ONXA

released
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf3_10x4

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R1
1
223JJCLT3
1
555 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
223JJCLT3
1
1.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
223JJCLT3
1
209 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
223JJCLT3
1
160 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
223JJCLT3
2
563 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
223JJCLT3
2
1.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
223JJCLT3
2
163 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
223JJCLT3
2
215 MB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples

Donors

3 items
Aliases
  • igvf:donor_of_WTC11
male
Homo sapiens
  • igvf:donor_of_H9
female
Homo sapiens
  • igvf:donor_of_HepG2
male
Homo sapiens

Related Measurement Sets

2 items
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf3_10x4
Ansuman Satpathy, Stanford
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf3_10x4
Ansuman Satpathy, Stanford

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf3_analysis_set
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford