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INDEXED
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AuxiliarySet
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IGVFDS0327AJZO
IGVFDS0327AJZO
released
Json view
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf12_10x7
Sequencing Results (Illumina)
28 items
1
2
3
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0268QUBM
fastq
reads
I2
1
IGVFFI2964ONBA
Illumina NovaSeq X
225LWLLT3
4
93 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0626CVGB
fastq
reads
R1
1
IGVFFI7974XZHL
Illumina NovaSeq X
225LWLLT3
1
345 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0771ZJDT
fastq
reads
I1
1
IGVFFI7974XZHL
Illumina NovaSeq X
225LWLLT3
1
143 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0837ERPB
fastq
reads
R1
1
IGVFFI2868CTHQ
Illumina NovaSeq X
225LWLLT3
5
348 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1692GFZI
fastq
reads
I1
1
IGVFFI8186CASL
Illumina NovaSeq X
225LWLLT3
2
142 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1709KJOZ
fastq
reads
R1
1
IGVFFI2964ONBA
Illumina NovaSeq X
225LWLLT3
4
342 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1719NTNR
fastq
reads
I1
1
IGVFFI6625TRHS
Illumina NovaSeq X
225LWLLT3
3
146 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4061UCIM
fastq
reads
R1
1
IGVFFI7680GSZW
Illumina NovaSeq X
225LWLLT3
7
311 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4073WFIQ
fastq
reads
R2
1
IGVFFI7974XZHL
Illumina NovaSeq X
225LWLLT3
1
781 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4377XQPW
fastq
reads
I2
1
IGVFFI2868CTHQ
Illumina NovaSeq X
225LWLLT3
5
95 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6125HAMH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Donors
3 items
Accession
Aliases
Sex
Taxa
IGVFDO0938OYMI
ansuman-satpathy:singh_bcell_donor_2
female
Homo sapiens
IGVFDO1264SGCS
ansuman-satpathy:bridge_bone_marrow_donor_2038
male
Homo sapiens
IGVFDO1718HCES
ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS8924NQYH
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf12_10x7
Ansuman Satpathy, Stanford
IGVFDS9237NVSE
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf12_10x7
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5437FJHN
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
ansuman-satpathy:igvf12_analysis_set_10x7
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford