{
"@context": "/terms/",
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"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
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"aliases": [
"jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin0hrs-Rep1"
],
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"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Auxiliary set [IGVFDS0282GEHF](/auxiliary-sets/IGVFDS0282GEHF/) has sequence file(s) [IGVFFI5080FNQC](/sequence-files/IGVFFI5080FNQC/), [IGVFFI0308CWCN](/sequence-files/IGVFFI0308CWCN/), [IGVFFI1051BZRQ](/sequence-files/IGVFFI1051BZRQ/), [IGVFFI2340RLRP](/sequence-files/IGVFFI2340RLRP/), [IGVFFI7481IACD](/sequence-files/IGVFFI7481IACD/), [IGVFFI7657ATAO](/sequence-files/IGVFFI7657ATAO/), [IGVFFI6529TUVF](/sequence-files/IGVFFI6529TUVF/), [IGVFFI9836SEKG](/sequence-files/IGVFFI9836SEKG/), [IGVFFI1579GEEH](/sequence-files/IGVFFI1579GEEH/), [IGVFFI6069TAYE](/sequence-files/IGVFFI6069TAYE/), [IGVFFI6689KNLG](/sequence-files/IGVFFI6689KNLG/), [IGVFFI1488GZKB](/sequence-files/IGVFFI1488GZKB/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/auxiliary-sets/IGVFDS0282GEHF/"
}
]
},
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},
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},
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],
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}
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},
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},
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},
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},
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},
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},
{
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},
{
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},
{
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],
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},
{
"@id": "/configuration-files/IGVFFI5492QJUN/",
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}
],
"input_for": [
"/analysis-sets/IGVFDS5308EMCG/"
],
"lab": {
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"title": "Jesse Engreitz, Stanford"
},
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{
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],
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}
],
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"samples": [
{
"@id": "/in-vitro-systems/IGVFSM5799ZEJH/",
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"Biosample",
"Sample",
"Item"
],
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"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_TAPseq-Auxin0hrs-Rep1"
],
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"cell line"
],
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"/construct-library-sets/IGVFDS9869EMNE/"
],
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{
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},
{
"@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
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}
],
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{
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"@type": [
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"OntologyTerm",
"Item"
],
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"igvf:HCT116"
],
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"term_name": "HCT116"
}
],
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"summary": "HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "12",
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"submitted_by": {
"@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
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},
"submitted_files_timestamp": "2024-06-03T19:14:28.215396+00:00",
"summary": "gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci",
"uuid": "7becfb30-bb65-4ea3-b353-3643e25e262d"
}