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IGVFDS0109SCQO

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
cell hashing barcode sequencing
Summary
cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_HTO_LW278

Sequencing Results (Illumina)

8 items
fastq
reads
I1
1
AAC7VLGHV
2
97 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC7VLGHV
1
522 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC7VLGHV
2
468 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC7VLGHV
1
106 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC7VLGHV
1
269 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC7VLGHV
1
106 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC7VLGHV
2
90 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC7VLGHV
2
242 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW278), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_LW278
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_PrimaryAnalysis
Gary Hon, UT

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT